PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS63328.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family MYB_related
Protein Properties Length: 286aa    MW: 30732.8 Da    PI: 5.886
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS63328.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.5e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+  l+ +++++G g W+tI +          R+  ++k++w+++
       EPS63328.1  5 KQKWTSEEEAALKAGIQKYGAGKWSTILKDPEfnvilRSRSNVDLKDKWRNL 56
                     79************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.422161IPR017930Myb domain
SuperFamilySSF466899.72E-16258IPR009057Homeodomain-like
SMARTSM007171.5E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-14556IPR009057Homeodomain-like
PfamPF002493.2E-8556IPR001005SANT/Myb domain
CDDcd116602.99E-21657No hitNo description
SMARTSM005262.5E-12119185IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467857.62E-15122194IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.372122190IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.4E-15124192IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.3E-10126183IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGI QKYGAGKWST ILKDPEFNVI LRSRSNVDLK DKWRNLNCMA  60
SGLGSRHRSS VSMRSSSSAP KNDEDAAAVN GMEIDREIVP FDATTPVAAS NAANLDSGSK  120
NQISRLEDVI MEAVSKLKEP RGSSRQSILD YVEDHYMTPP EFGKILSARL KLLTENGKLI  180
KVKHQYRIAP SAALLNPSKV PTATATGVKR DGCEDSVVVI TKAQVDAELE KMKCMTAEEA  240
AAAAAQAVAE AEAAIEAAEI AAREAEEAEA EAEAARCFAI ATRKAL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099389.15e-96PREDICTED: telomere repeat-binding factor 1 isoform X2
TrEMBLS8DKH40.0S8DKH4_9LAMI; Uncharacterized protein (Fragment)
STRINGSolyc02g064630.2.15e-82(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51222235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-59telomere repeat binding factor 1
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]